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2003

Sallaud C, Meynard D, van Boxtel J, Gay C, Bès M, Brizard JP, Larmande P, Ortega D, Raynal M, Portefaix M et al.. 2003. Highly efficient production and characterization of T-DNA plants for rice (Oryza sativa L.) functional genomics. Theoretical and Applied Genetics. 106:1396-1408.

Sallaud C, Meynard D, van Boxtel J, Gay C, Bès M, Brizard JP, Larmande P, Ortega D, Raynal M, Portefaix M et al.. 2003. Highly efficient production and characterization of T-DNA plants for rice ( Oryza sativa L.) functional genomics. TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 106(8):1396-408. Abstract

2004

Ruiz M, Rouard M, Raboin LM, Lartaud M, Lagoda P, Courtois B. 2004. TropGENE-DB, a multi-tropical crop information system.. Nucleic acids research. 32(Database issue):D364-7. Abstract

Pugh T, Fouet O, Risterucci AM, Brottier P, Abouladze M, Deletrez C, Courtois B, Clement D, Larmande P, N’Goran JAK et al.. 2004. A new cacao linkage map based on codominant markers: development and integration of 201 new microsatellite markers. TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 108(6):1151-61. Abstract

Sallaud C, Gay C, Larmande P, Bès M, Piffanelli P, Piégu B, Droc G, Regad F, Bourgeois E, Meynard D et al.. 2004. High throughput T-DNA insertion mutagenesis in rice: a first step towards in silico reverse genetics. The Plant journal : for cell and molecular biology. 39(3):450-64. Abstract

Sallaud C, Gay C, Larmande P, Bès M, Piffanelli P, Piégu B, Droc G, Regad F, Bourgeois E, Meynard D et al.. 2004. High throughput T-{DNA} insertion mutagenesis in rice: a first step towards in silico reverse genetics. The Plant Journal. 39:450–464.

Pugh T, Fouet O, Risterucci AM, Brottier P, Abouladze M, Deletrez C, Courtois B, Clement D, Larmande P, N'Goran JAK et al.. 2004. A new cacao linkage map based on codominant markers: development and integration of 201 new microsatellite markers. Theor Appl Genet. 108:1151–1161.

2005

Guignon V, Chauve C, Hamel S. 2005. An edit distance between RNA stem-loops. LECTURE NOTES IN COMPUTER SCIENCE. 3772:335-347. Abstract

Dufayard JF, Duret L, Penel S, Gouy M, Rechenmann F, Perrière G. 2005. Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases.. Bioinformatics (Oxford, England). 21(11):2596-603. Abstract

Jouannic S, Argout X, Lechauve F, Fizames C, Borgel A, Morcillo F, Aberlenc-Bertossi F, Duval Y, Tregear J. 2005. Analysis of expressed sequence tags from oil palm (Elaeis guineensis). FEBS Lett. 579(12):2709-14. Abstract

van Enckevort LJG, Droc G, Piffanelli P, Greco R, Gagneur C, Weber C, González VM, Cabot P, Fornara F, Berri S et al.. 2005. EU-OSTID: a collection of transposon insertional mutants for functional genomics in rice. Plant molecular biology. 59(1):99-110. Abstract

2006

Larmande P, Tranchant-Dubreuil C, Regnier L, Mougenot I, Libourel T. 2006. Integration of data sources for plant genomics. ICEIS 2006 - 8th International Conference on Enterprise Information Systems, Proceedings. DISI:314-318.

Droc G, Ruiz M, Larmande P, Pereira A, Piffanelli P, Morel JB, Dievart A, Courtois B, Guiderdoni E, Périn C. 2006. OryGenesDB: a database for rice reverse genetics.. Nucleic acids research.. 34

Hocher V, Auguy F, Argout X, Laplaze L, Franche C, Bogusz D. 2006. Expressed sequence-tag analysis in Casuarina glauca actinorhizal nodule and root. New Phytol. 169(4):681-8. Abstract

Droc G, Ruiz M, Larmande P, Pereira A, Piffanelli P, Morel J-B, Dievart A, Courtois B, Guiderdoni E, Périn C. 2006. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Research. 34(Database i):D736-40-D736-40. Abstract

Droc G. 2006. {OryGenesDB}: a database for rice reverse genetics. Nucleic Acids Research. 34:D736–D740.

2007

Hamelin C, Ruiz M, Argout X. 2007. TropGENE-DB, a multi-tropical crop information system. 4th International Workshop DILS.

Argout X, Ruiz M, Rouard M, Turnbull C, Lanaud C, Rosenquist E, Courtois B. 2007. CocoaGen DB: a Web portal for crossing cocoa phenotypic, genetic and genomic data from ICGD and TropGeneDB databases.. 15th International Cocoa Research Conference. 1:515-518.

Terol J, Conesa A, Colmenero JM, Cercos M, Tadeo F, Agusti J, Alos E, Andres F, Soler G, Brumos J et al.. 2007. Analysis of 13000 unique Citrus clusters associated with fruit quality, production and salinity tolerance. BMC Genomics. 8:31-31. Abstract

Vergne E, Ballini E, Marques S, Mammar SB, Droc G, Gaillard S, Bourot S, DeRose R, Tharreau D, Jean-Loup et al.. 2007. Early and specific gene expression triggered by rice resistance gene Pi33 in response to infection by ACE1 avirulent blast fungus. The New phytologist. 174(1):159-71. Abstract

Argout X, Ruiz M, Fouet O, Lanaud C, Wincker P, Da Silva C, Courtois B. 2007. ESTtik : a semi-automatic cDNA sequence analysis and annotation pipeline including SSR and SNP search tools.. 15th International Cocoa Research Conference. 1:501-506.

Lanaud C, Fouet O, Gramacho KP, Argout X, Legavre T, Sabau X, Risterucci AM, Wincker P, Da Silva C, Loor Solorzano RG et al.. 2007. A large EST resource for theobroma cacao L. 15th Plant and Animal Genomes Conference.

Dereeper A, Argout X, Billot C, Rami JF, Ruiz M. 2007. SAT, a flexible and optimized Web application for SSR marker development. BMC Bioinformatics. 8:465-465. Abstract

Piffanelli P, Droc G, Mieulet D, Lanau N, Bès M, Bourgeois E, Rouvière C, Gavory F, Cruaud C, Ghesquière A et al.. 2007. Large-scale characterization of Tos17 insertion sites in a rice T-DNA mutant library. Plant Mol Biol. Abstract

Larmande P, Gay C, Lorieux M, Perin C, Bouniol M, Droc G, Sallaud C, Perez P, Barnola I, Biderre-Petit C et al.. 2007. Oryza Tag Line, a phenotypic mutant database for the Genoplante rice insertion line library. Nucleic Acids Research. 36:D1022–D1027.